Publications

 

2017

  • Dhaka N., Bhardwaj V., Sharma MK. and Sharma R.  (2017) Evolving tale of TCPs: New paradigm and old lacunae. Frontiers in Plant Science  03 April 2017 | https://doi.org/10.3389/fpls.2017.00479.

 2016

  • Francis A, Dhaka N, Bakshi M, Jung K-H, Sharma MK and Sharma R (2016) Comparative phylogenomic analysis provides insights into TCP gene functions in SorghumScientific Reports, 6, 38488; doi:10.1038/srep38488.
  • Sharma R., Wungrampha W., Singh V., Pareek A. and Sharma, M.K. (2016) Halophytes as bioenergy crops. Frontiers in Plant Science  7:1372  doi: 10.3389/fpls.2016.01372.
  • Chandran A.K.N., Yoo Y.H., Cao P., Sharma R., Sharma M.K., Dardick C., Ronald P.C. and Jung K.H. (2016) Updated rice kinase database RKD 2.0: enabling transcriptome and functional analysis of rice kinase genes. Rice 9:40.
  • Gupta P., Sharma R., Sharma M.K., Sharma M.P., Stapute G.K., Garg S., Singla-Pareek, S.L., Pareek A. (2016) Signaling cross talk between biotic and abiotic stress responses in soybean. Abiotic and Biotic Stresses in Soybean Production, Volume 1, 27-52.
  • Sharma MK, Sharma R, Cao P, Harkenrider M, Jenkins J, Grimwood J, Zhang j, Udvardi MK, Schmutz J and Ronald PC (2016) Targeted switchgrass BAC library screening and sequence analysis identified predicted biomass and stress response-related genes. In. BioEnergy Research,  DOI:10.1007/s12155-015-9667-1

2015

  • Lao J, Sharma MK, Sharma R, Gonzalez Fernandez-Nino SM, Schmutz J, Ronald PC, Heazlewood JL and Schwessinger B (2015) Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum). In. Protomics, 13:2286-90, DOI: 10.1002/pmic.201400487.

2014

  • Sharma AK, Sharma MK (2014) Plants as host for recombinant DNA. In. Gene and its Engineering; Edited by H. K. Das, Wiley India, pp 410-433.

2013

  • Sharma R, Cao P, Jung K-H, Sharma MK and Ronald PC (2013)Construction of a rice glycoside hydrolase phylogenomic database and identification of targets for biofuel research. Frontiers in Plant Biotechnology. 26, 330 doi: 10.3389/fpls.2013.00330.
  • Rodrigues JA, Ruan R, Nishimura T, Sharma MK, Sharma R, Ronald PC, Fischer RL and Zilberman D (2013) Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm. PNAS, 110(19):7934-9. doi: 10.1073/pnas.1306164110.
  • Zhang JY, Lee YC, Jerez IT, Wang M, Yin Y, Chou WC, He J, Shen H, Pennacchio C, Lindquist E, Grimwood J, Schmutz J, Xu Y, Sharma MK, Sharma R, Ronald P, Saha M, Dixon R, Tang Y and Udvardi M (2013) Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.). The Plant Journal,74(1), 160-73. doi: 10.1111/tpj.12104.
  • Sharma R, David D, Sharma MK and Ronald PC (2013) Recent advances in dissecting stress regulatory crosstalk in rice. Molecular Plant,  6(2), 250-60. doi: 10.1093/mp/sss147.

2012

  • Varanasi P, Katsnelson J, Larson D, Sharma R, Sharma MK, Vega-Sanchez ME, Zemla M, Ronald PC, Simmons B, Sing S, Adams P and Auer M (2012) Mechanical Stress Analysis as a method to understand the impact of genetically engineered rice and Arabidopsis plants. Industrial Biotechnology, 8, 238-44. doi:10.1089/ind.2012.0011.
  • Bennetzen JL, Schmutz J, Wang H, Percifield R, Hawkins J, Pontaroli AC, Estep M, Feng L, Vaughn JN, Grimwood J, Jenkins J, Barry K, Lindquist E, Hellsten U, Seshpande S, Wang X, Wu X, Mitros T, Triplett J, Yang X, Ye C, Mauro-Herrara M, Wang L, Li P, Sharma MK, Sharma R, Ronald PC, Panaud O, Kellogg EA, Brutnell T, Doust A, Tuskan GA, Rokshar D, Devos KM. (2012) Reference genome sequence of the model plant Setaria. Nature Biotechnology, 30, 555-561. doi:10.1038/nbt.2196.
  • Sharma MK, Sharma R, Cao P, Jenkins J, Bartley L, Grimwood J, Schmutz J, Rokhsar D and Ronald PC (2012  A genome-wide survey of switchgrass genome structure and organization. PLoS One, 7 (4) e33892. doi:10.1371/journal.pone.0033892.
  • Kumar R, Sharma MK, Kapoor, S, Tyagi, AK and Sharma AK. (2012) Transcriptome analysis of rin mutant fruit and in silico analysis of promoters of differentially regulated genes provides insight into LeMADS-RIN-regulated ethylene-dependent as well as ethylene-independent aspects of ripening in tomato. Molecular Genetics and Genomics, 287, 189-203. doi: 10.1007/s00438-011-0671-7.

2011

  • Sharma R, Tan F, Jung KH, Sharma MK, Peng Z and Ronald PC (2011) Transcriptional dynamics during cell wall removal and regeneration reveals key genes involved in cell wall development in rice. Plant Molecular Biology 77, 391-406. doi: 10.1007/s11103-011-9819-4.

2010

  • The International Brachypodium Initiative (2010) Genome sequence analysis of the model grass Brachypodium distachyon: insights into grass genome evolution. Nature 463, 763-768. doi:10.1038/nature08747.
  • Sharma MK, Kumar R, Solanke AU, Sharma R, Tyagi AK and Sharma AK. (2010). Identification, phylogeny and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato. Molecular Genetics and Genomics, 284, 455-475.

2009

  • Sharma MK, Solanke AU, Jani D, Singh Y and Sharma AK. (2009) A simple and highly efficient Agrobacterium-mediated procedure for transformation of tomato. Journal of Biosciences, 34, 423-433. doi: 10.1007/s00438-010-0580-1.
  • Sharma AK and Sharma MK (2009) Plant as Bioreactors: Recent Developments and Emerging Opportunities. Biotechnology Advances, 27, 811-832. doi: 10.1016/j.biotechadv.2009.06.004.
  • Solanke AU, Sharma MK, Tyagi AK and Sharma AK. (2009) Characterization and phylogenetic analysis of environmental stress-responsive SAP gene family encoding A20/AN1 zinc finger proteins in tomato. Molecular Genetics and Genomics, 282, 153-164. doi: 10.1007/s00438-009-0455-5.
  • Gupta V, Mathur S, Solanke AU, Sharma MK, Kumar R, Vyas S, Khurana P, Khurana JP, Tyagi AK and Sharma AK. (2009) Genome analysis and genetic enhancement of tomato. Critical Reviews in Biotechnology, 29, 152-81. doi: 10.1080/07388550802688870.

2008

  • Sharma MK, Singh N, Jani D, Sisodia R, Thungapathra M, Gautam JK, Meena LS, Singh Y, Ghosh A, Tyagi AK and Sharma AK (2008) Expression of toxin co-regulated pilus subunit A (TCPA) of Vibrio cholerae and its immunogenic epitopes fused to cholera toxin B subunit in transgenic tomato (Solanum lycopersicum). Plant Cell Reports 27, 307-318. 10.1007/s00299-007-0464-y. 
  • Sharma MK, Jani D, Thungapathra M, Gautam JK, Meena LS, Singh Y, Ghosh A, Tyagi AK and Sharma AK (2008) Expression of accessory colonization factor subunit A (ACFA) of Vibrio cholerae and ACFA fused to cholera toxin B subunit in transgenic tomato (Solanum lycopersicum). Journal of Biotechnology 135, 22-27. doi: 10.1016/j.jbiotec.2008.03.002.

 

Public Citation of Resarch

JBEI gets results from proteomics in switchgrass varieties, http://www.biofuelsdigest.com/bdigest/2015/03/09/jbei-gets-results-from-proteomics-in-switchgrass-varieties/

Biofuel Proteomics, http://www.eurekalert.org/pub_releases/2015-03/dbnl-bp030915.php

Biofuel Proteomics, http://www.sciencenewsline.com/articles/2015030921350014.html

Biofuel Proteomics: Joint BioEnergy Institute researchers use proteomics to profile switchgrass, http://shaleoil.einnews.com/pr_news/253828120/biofuel-proteomics-joint-bioenergy-institute-researchers-use-proteomics-to-profile-switchgrass

Biofuel proteomics: Researchers use proteomics to profile switchgrass, http://www.sciencedaily.com/releases/2015/03/150309145729.html

Joint BioEnergy Institute researchers use proteomics to profile switchgrass, http://press-news.org/143747-biofuel-proteomics.html

Switchgrass proteomics for improved next generation biofuel crops, http://www.hfsp.org/frontier-science/awardees-articles/switchgrass-proteomics-improved-next-generation-biofuel-crops

DOE JGI Science Highlights: An alternative surrogate for gene discovery in switchgrass, http://jginews.blogspot.com/2012/04/doe-jgi-science-highlights-alternative.html, April 13, 2012.

Relative Reference: Foxtail miller offers clues for assembling the switchgrass genome. http://www.highbeam.com/doc/1G1-289624012.html, May 14, 2012.

Scientists map and sequence genome of switchgrass relative foxtail millet, http://phys.org/news/2012-06-scientists-sequence-genome-switchgrass-relative.html,  June 1, 2012.

Genome Web Daily News, http://www.genomeweb.com/genomics-journals-63, May 17, 2012.

UGA scientists map and sequence genome of switchgrass relative foxtail millet, The Red & Black, http://www.redandblack.com/news/environment/uga-scientists-map-and-sequence-genome-of-switchgrass-relative-foxtail/article_5ee5ba66-ae7c-11e1-b02c-001a4bcf6878.html, June 3, 2012.

Foxtail Millet Offers Clues for Assembling the Switchgrass Genome, Science Daily, http://www.sciencedaily.com/releases/2012/05/120514134252.html, May 14 2012.

First wild grass species sequenced, UC News Room, http://www.universityofcalifornia.edu/news/article/22814, Feb 2010

Why to Celebrate the Publication of the Brachypodium Genome, http://www.jamesandthegiantcorn.com/2010/02 /11/why-to-celebrate-the-publication-of-the-brachypodium-genome/, Feb 2010.

New genome sequence will aid study of important food, fuel crops, http://oregonstate.edu/ua/ncs/archives /2010/feb/new-genome-sequence-will-aid-study-important-food-fuel-crops, Feb 2010

 



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